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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
DNase-seq
5
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
218
DNA binding
12
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
28
May, 2019
18
July, 2019
16
October, 2017
February, 2020
3
March, 2020
1
February, 2023
Available data
211
bam
190
bigWig
171
bed narrowPeak
118
tagAlign
95
bigBed narrowPeak
19
fastq
15
bed broadPeak
15
tsv
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
243
Homo sapiens
Biosample type
226
tissue
16
primary cell
1
cell line
Organ
937
pancreas
784
liver
673
connective tissue
505
epithelium
487
adipose tissue
320
heart
273
kidney
242
brain
222
vasculature
218
blood vessel
159
bone element
135
artery
83
limb
69
blood
69
bodily fluid
61
musculature of body
56
eye
40
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
243
AMP
Genome assembly (visualization)
185
GRCh38
142
hg19
Lab
243
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
DNase-seq
month_released!
February, 2020
BIOSAMPLE
ASSAY
243 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
20
1
1
1
layer of hippocampus
23
temporal lobe
15
1
1
substantia nigra
16
angular gyrus
15
+ See 70 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
cell line
MCF-7
1
See all biosamples
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