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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
16
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
Assay category
122
DNA binding
23
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
94
histone
94
histone modification
82
narrow histone mark
31
control
12
broad histone mark
Date released
84
October, 2019
28
November, 2017
17
July, 2019
11
February, 2020
10
October, 2017
3
March, 2020
3
May, 2019
1
February, 2023
Available data
241
bam
220
bigWig
201
bed narrowPeak
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
157
Homo sapiens
Biosample type
146
tissue
10
primary cell
1
cell line
Organ
774
pancreas
647
connective tissue
480
adipose tissue
432
liver
362
epithelium
297
heart
232
kidney
156
brain
153
vasculature
151
blood vessel
116
artery
75
bone element
55
eye
48
musculature of body
38
limb
31
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
157
AMP
Genome assembly (visualization)
97
hg19
89
GRCh38
Lab
157
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigBed narrowPeak
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
157 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
tissue
brain
14
1
1
1
cingulate gyrus
8
layer of hippocampus
7
substantia nigra
5
1
cerebellum (Hemisphere)
3
1
1
+ See 70 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
cell line
MCF-7
1
See all biosamples
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