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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
Assay category
28
DNA binding
24
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
96
histone
histone modification
84
narrow histone mark
31
control
12
broad histone mark
Date released
17
July, 2019
15
November, 2017
12
February, 2020
9
October, 2019
4
October, 2017
3
March, 2020
3
May, 2019
1
February, 2023
Available data
77
bam
56
bigWig
36
bed narrowPeak
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
27
tsv
19
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
64
Homo sapiens
Biosample type
53
tissue
10
primary cell
1
cell line
Organ
753
pancreas
587
connective tissue
450
adipose tissue
384
epithelium
365
liver
253
heart
242
kidney
159
bone element
148
vasculature
146
blood vessel
116
artery
63
brain
53
eye
37
limb
30
musculature of body
25
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
21
hg19
14
GRCh38
Lab
64
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigBed narrowPeak
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
tissue
brain
3
1
1
1
cerebellum (Hemisphere)
2
1
1
1
temporal lobe
2
1
1
caudate nucleus
2
1
frontal cortex
2
1
+ See 22 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
cell line
MCF-7
1
See all biosamples
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