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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
127
DNA binding
37
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
114
histone
114
histone modification
86
narrow histone mark
28
broad histone mark
16
control
Date released
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
March, 2020
2
November, 2018
1
February, 2023
Available data
165
bam
156
bigWig
139
bed narrowPeak
64
bigBed narrowPeak
52
tagAlign
35
bed bed3+
35
bed broadPeak
32
bigBed broadPeak
24
tsv
12
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
193
Homo sapiens
Biosample type
181
tissue
12
primary cell
Organ
932
pancreas
682
connective tissue
512
epithelium
490
adipose tissue
473
liver
386
heart
352
kidney
226
vasculature
223
blood vessel
193
brain
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
0
mammary gland
Project
193
AMP
Genome assembly (visualization)
154
GRCh38
149
hg19
Lab
193
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
March, 2020
November, 2017
BIOSAMPLE
ASSAY
193 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
20
14
1
1
1
temporal lobe
15
1
1
angular gyrus
15
cerebellum (Hemisphere)
2
1
1
1
1
frontal cortex
2
2
1
1
+ See 74 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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