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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
97
DNA binding
35
DNA accessibility
24
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
185
histone
185
histone modification
narrow histone mark
70
broad histone mark
29
control
1
RNA binding protein
1
transcription factor
Date released
56
November, 2017
28
June, 2019
18
May, 2019
16
July, 2019
14
October, 2017
12
February, 2020
12
October, 2019
3
March, 2020
2
November, 2018
1
February, 2023
Available data
132
bam
109
bigWig
93
bed narrowPeak
90
bigBed narrowPeak
64
tagAlign
35
bed broadPeak
32
bed bed3+
31
bigBed broadPeak
27
tsv
13
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
162
Homo sapiens
Biosample type
151
tissue
10
primary cell
1
cell line
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
162
AMP
Genome assembly (visualization)
106
GRCh38
64
hg19
Lab
162
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
organ_slims!
vasculature
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
162 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
single cell RNA-seq
Hi-C
FAIRE-seq
RRBS
tissue
brain
16
14
1
1
1
layer of hippocampus
15
caudate nucleus
10
1
1
temporal lobe
10
1
1
substantia nigra
10
1
+ See 29 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
cell line
MCF-7
1
See all biosamples
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