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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
50
DNase-seq
1
FAIRE-seq
Assay category
91
DNA binding
51
DNA accessibility
Target of assay
88
histone
88
histone modification
56
broad histone mark
32
narrow histone mark
3
RNA binding protein
3
transcription factor
Date released
63
November, 2017
48
June, 2019
25
May, 2019
3
October, 2017
2
November, 2018
1
July, 2019
Available data
258
bam
237
bigWig
218
bed narrowPeak
142
bigBed narrowPeak
114
tagAlign
63
bed broadPeak
56
bigBed broadPeak
53
bed bed3+
27
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
142
Homo sapiens
Biosample type
131
tissue
11
primary cell
Organ
346
liver
124
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
0
mammary gland
Project
142
AMP
Genome assembly (visualization)
141
GRCh38
80
hg19
Lab
142
AMP-T2D consortium
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
142 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
3
14
layer of hippocampus
16
caudate nucleus
12
1
temporal lobe
13
angular gyrus
12
+ See 17 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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