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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
65
DNase-seq
9
Hi-C
7
RRBS
5
ATAC-seq
3
pCHi-C
1
FAIRE-seq
1
WGBS
1
snATAC-seq
Assay category
257
DNA binding
72
DNA accessibility
Transcription
9
3D chromatin structure
8
DNA methylation
Target of assay
220
histone
220
histone modification
130
narrow histone mark
90
broad histone mark
34
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
73
June, 2019
35
May, 2019
26
August, 2017
16
October, 2017
13
July, 2019
5
March, 2020
2
November, 2018
1
February, 2023
1
January, 2018
1
May, 2022
Available data
282
bam
272
bigWig
263
bed narrowPeak
174
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
71
bigBed broadPeak
69
bed bed3+
23
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
3
tsv
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
349
Homo sapiens
Biosample type
319
tissue
30
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
349
AMP
Genome assembly (visualization)
252
GRCh38
219
hg19
Lab
349
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
assay_slims!
Transcription
BIOSAMPLE
ASSAY
349 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
ATAC-seq
pCHi-C
FAIRE-seq
WGBS
snATAC-seq
tissue
brain
20
14
1
1
skeletal muscle tissue
22
4
1
1
layer of hippocampus
23
muscle of leg
7
13
1
muscle of arm
17
+ See 80 more…
primary cell
skeletal muscle satellite cell
8
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
skeletal muscle cell
2
1
1
+ See 2 more…
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