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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
ChIP-seq
14
total RNA-seq
10
DNase-seq
4
Hi-C
3
ATAC-seq
3
pCHi-C
2
RRBS
1
WGBS
1
single cell RNA-seq
Assay category
107
DNA binding
15
Transcription
13
DNA accessibility
4
3D chromatin structure
3
DNA methylation
Target of assay
76
histone
76
histone modification
49
broad histone mark
31
control
27
narrow histone mark
Date released
76
November, 2017
14
February, 2020
12
June, 2019
11
August, 2017
10
October, 2017
8
October, 2019
6
July, 2019
4
May, 2019
3
March, 2020
1
May, 2022
Available data
92
bam
77
tagAlign
64
bigWig
62
bed narrowPeak
62
bigBed narrowPeak
17
tsv
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
4
fastq
1
bed bedMethyl
1
bigBed bedMethyl
Organism
145
Homo sapiens
Biosample type
143
tissue
2
primary cell
Organ
288
pancreas
225
kidney
213
epithelium
166
liver
165
heart
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
145
AMP
Genome assembly (visualization)
270
GRCh38
hg19
Lab
145
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
BIOSAMPLE
ASSAY
145 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
ATAC-seq
pCHi-C
RRBS
WGBS
single cell RNA-seq
tissue
layer of hippocampus
22
caudate nucleus
14
1
1
substantia nigra
14
1
cingulate gyrus
12
middle frontal area 46
12
+ See 33 more…
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
See all biosamples
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