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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
65
DNase-seq
23
total RNA-seq
9
Hi-C
6
small RNA-seq
5
ATAC-seq
4
single cell RNA-seq
3
pCHi-C
2
RRBS
1
FAIRE-seq
1
snATAC-seq
Assay category
257
DNA binding
72
DNA accessibility
33
Transcription
9
3D chromatin structure
2
DNA methylation
Target of assay
220
histone
220
histone modification
130
narrow histone mark
90
broad histone mark
37
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
73
June, 2019
35
May, 2019
24
August, 2017
24
July, 2019
16
October, 2017
14
February, 2020
7
March, 2020
2
May, 2022
2
November, 2018
1
February, 2023
1
January, 2018
Available data
300
bam
290
bigWig
263
bed narrowPeak
174
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
71
bigBed broadPeak
69
bed bed3+
35
tsv
23
fastq
6
bed bedMethyl
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
376
Homo sapiens
Biosample type
343
tissue
33
primary cell
Organ
940
pancreas
788
liver
681
connective tissue
518
epithelium
489
adipose tissue
350
kidney
345
heart
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
376
AMP
Genome assembly (visualization)
269
GRCh38
232
hg19
Lab
376
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
376 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
RRBS
FAIRE-seq
snATAC-seq
tissue
brain
20
14
1
1
skeletal muscle tissue
22
1
1
1
1
2
1
layer of hippocampus
23
muscle of leg
7
13
caudate nucleus
15
1
1
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primary cell
skeletal muscle satellite cell
8
1
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
skeletal muscle cell
2
1
+ See 4 more…
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