Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
249
ChIP-seq
34
DNase-seq
22
total RNA-seq
5
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
249
DNA binding
40
DNA accessibility
29
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
207
histone
207
histone modification
124
narrow histone mark
83
broad histone mark
42
control
3
RNA binding protein
3
transcription factor
Date released
128
October, 2019
91
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
13
February, 2020
12
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
282
bam
250
bigWig
227
bed narrowPeak
150
bigBed narrowPeak
114
tagAlign
47
bed broadPeak
40
bigBed broadPeak
37
bed bed3+
31
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
325
Homo sapiens
Biosample type
304
tissue
21
primary cell
Organ
892
pancreas
778
liver
667
connective tissue
503
epithelium
479
adipose tissue
354
kidney
353
heart
282
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
325
AMP
Genome assembly (visualization)
245
GRCh38
192
hg19
Lab
325
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
325 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
tibial nerve
35
2
5
1
brain
16
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
+ See 78 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
See all biosamples
Download