Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
244
ChIP-seq
29
DNase-seq
22
total RNA-seq
5
ATAC-seq
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
244
DNA binding
35
DNA accessibility
26
Transcription
1
DNA methylation
Target of assay
208
histone
208
histone modification
122
narrow histone mark
86
broad histone mark
36
control
Date released
128
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
16
October, 2017
13
February, 2020
11
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
268
bam
233
bigWig
219
bed narrowPeak
142
bigBed narrowPeak
118
tagAlign
38
bed broadPeak
29
bed bed3+
29
bigBed broadPeak
28
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
308
Homo sapiens
Biosample type
308
tissue
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
340
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
308
AMP
Genome assembly (visualization)
234
GRCh38
174
hg19
Lab
308
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
biosample_type!
primary cell
BIOSAMPLE
ASSAY
308 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
+ See 78 more…
See all biosamples
Download