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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
34
DNase-seq
5
ATAC-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
253
DNA binding
40
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
211
histone
211
histone modification
125
narrow histone mark
86
broad histone mark
39
control
3
RNA binding protein
3
transcription factor
Date released
123
October, 2019
91
November, 2017
30
June, 2019
28
May, 2019
16
October, 2017
7
July, 2019
2
November, 2018
1
February, 2023
Available data
285
bam
253
bigWig
230
bed narrowPeak
153
bigBed narrowPeak
118
tagAlign
49
bed broadPeak
40
bigBed broadPeak
37
bed bed3+
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
298
Homo sapiens
Biosample type
280
tissue
18
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
298
AMP
Genome assembly (visualization)
232
GRCh38
179
hg19
Lab
298
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
tsv
BIOSAMPLE
ASSAY
298 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
tissue
tibial nerve
35
2
1
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
+ See 73 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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