Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
ChIP-seq
23
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
2
RRBS
1
FAIRE-seq
Assay category
135
DNA binding
26
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
123
histone
123
histone modification
94
narrow histone mark
29
broad histone mark
9
transcription factor
6
control
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
78
October, 2019
25
May, 2019
20
June, 2019
17
July, 2019
15
November, 2017
7
October, 2017
6
January, 2019
6
November, 2018
3
December, 2018
1
February, 2023
Available data
173
bigWig
169
bam
155
bed narrowPeak
78
bigBed narrowPeak
43
tagAlign
38
bed broadPeak
31
fastq
29
bigBed broadPeak
26
bed bed3+
12
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
178
Homo sapiens
Biosample type
157
tissue
21
primary cell
Organ
658
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
178
AMP
Genome assembly (visualization)
233
GRCh38
178
hg19
Lab
178
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
178 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
RRBS
FAIRE-seq
tissue
brain
11
14
1
1
1
temporal lobe
13
1
1
angular gyrus
14
spleen
12
1
1
frontal cortex
2
1
1
1
+ See 67 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
See all biosamples
Download