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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
33
DNase-seq
17
total RNA-seq
5
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
2
WGBS
1
FAIRE-seq
Assay category
45
DNA binding
39
DNA accessibility
24
Transcription
4
DNA methylation
3
3D chromatin structure
Target of assay
193
histone
histone modification
119
narrow histone mark
74
broad histone mark
39
control
9
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
30
June, 2019
18
July, 2019
18
November, 2017
12
February, 2020
11
November, 2018
9
October, 2019
7
December, 2018
5
October, 2017
3
March, 2020
3
May, 2019
1
February, 2023
1
January, 2019
Available data
95
bam
66
bigWig
44
bed narrowPeak
43
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
29
fastq
27
tsv
19
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
Organism
118
Homo sapiens
Biosample type
100
tissue
18
primary cell
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
118
AMP
Genome assembly (visualization)
59
GRCh38
55
hg19
Lab
118
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
WGBS
FAIRE-seq
tissue
brain
3
14
1
1
1
spleen
14
1
1
1
2
cerebellum (Hemisphere)
2
1
1
1
1
frontal cortex
2
2
1
1
caudate nucleus
2
1
1
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primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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