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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
32
DNase-seq
1
FAIRE-seq
Assay category
95
DNA binding
33
DNA accessibility
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
3
RNA binding protein
3
transcription factor
Date released
October, 2019
64
November, 2017
30
June, 2019
25
May, 2019
6
October, 2017
2
November, 2018
1
July, 2019
Available data
160
bam
146
bigWig
128
bed narrowPeak
127
bigBed narrowPeak
80
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
128
Homo sapiens
Biosample type
117
tissue
11
primary cell
Organ
435
liver
207
pancreas
186
heart
167
kidney
130
epithelium
128
brain
99
vasculature
95
blood vessel
75
connective tissue
60
musculature of body
54
blood
54
bodily fluid
53
artery
44
limb
33
eye
18
ureter
14
embryo
14
spleen
13
adipose tissue
8
bone element
8
skeleton
0
stomach
Project
128
AMP
Genome assembly (visualization)
126
GRCh38
66
hg19
Lab
128
AMP-T2D consortium
Audit category:
3
missing controlled_by
month_released!
October, 2019
BIOSAMPLE
ASSAY
128 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
6
14
layer of hippocampus
16
caudate nucleus
12
1
temporal lobe
13
angular gyrus
12
+ See 14 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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