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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
DNA binding
24
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
20
June, 2019
17
July, 2019
2
November, 2018
1
February, 2023
1
October, 2019
Available data
38
bigWig
35
bam
25
bed bed3+
23
bed narrowPeak
23
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
12
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
fastq
1
bed bed3
Organism
41
Homo sapiens
Biosample type
29
tissue
12
primary cell
Organ
513
connective tissue
495
pancreas
407
adipose tissue
210
epithelium
196
liver
114
heart
90
kidney
86
vasculature
83
blood vessel
70
bone element
68
artery
48
limb
46
musculature of body
41
brain
32
eye
18
ureter
14
embryo
12
skeleton
7
nerve
5
vein
2
pericardium
2
spleen
1
blood
1
bodily fluid
0
urinary bladder
Project
41
AMP
Genome assembly (visualization)
46
GRCh38
41
hg19
Lab
41
AMP-T2D consortium
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
41 results
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DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
14
1
1
1
frontal cortex
2
1
1
1
cerebellum (Hemisphere)
1
1
diencephalon
1
1
temporal lobe
1
1
+ See 1 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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