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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
total RNA-seq
9
single cell RNA-seq
4
small RNA-seq
3
pCHi-C
Assay category
91
Transcription
Target of assay
3
control
Date released
52
February, 2021
16
July, 2019
15
February, 2020
6
August, 2021
4
March, 2020
1
October, 2019
Available data
420
bam
368
bigWig
330
bed narrowPeak
204
bigBed narrowPeak
124
tagAlign
94
tsv
58
bed broadPeak
49
bigBed broadPeak
45
bed bed3+
21
fastq
4
hdf5
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
1
bed bed3
1
tagAlign bed3+
1
tar
Organism
94
Homo sapiens
Biosample type
52
cell line
37
tissue
5
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
94
AMP
Genome assembly (visualization)
70
GRCh38
70
hg19
Lab
94
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
94 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
tissue
aorta
1
4
1
frontal cortex
2
1
Ammon's horn
1
1
ascending aorta
2
cerebellum
2
+ See 17 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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