Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
235
ChIP-seq
34
DNase-seq
5
Hi-C
4
ATAC-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
235
DNA binding
40
DNA accessibility
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
202
histone
202
histone modification
123
narrow histone mark
79
broad histone mark
30
control
3
RNA binding protein
3
transcription factor
Date released
106
October, 2019
91
November, 2017
30
June, 2019
28
May, 2019
16
October, 2017
7
July, 2019
3
March, 2020
2
November, 2018
1
February, 2023
Available data
251
bam
225
bigWig
216
bed narrowPeak
140
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
37
bed bed3+
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
2
tsv
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
284
Homo sapiens
Biosample type
244
tissue
40
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
284
AMP
Genome assembly (visualization)
217
GRCh38
169
hg19
Lab
284
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
assay_slims!
Transcription
BIOSAMPLE
ASSAY
284 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
RRBS
pCHi-C
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 73 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 1 more…
See all biosamples
Download