Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
12
total RNA-seq
10
DNase-seq
3
ATAC-seq
2
pCHi-C
Assay category
100
DNA binding
13
DNA accessibility
12
Transcription
Target of assay
73
histone
73
histone modification
47
broad histone mark
27
control
26
narrow histone mark
Date released
76
November, 2017
13
October, 2019
12
February, 2020
10
June, 2019
10
October, 2017
3
May, 2019
2
March, 2020
1
July, 2019
Available data
93
bam
75
tagAlign
63
bigWig
62
bed narrowPeak
62
bigBed narrowPeak
14
tsv
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
4
fastq
Organism
127
Homo sapiens
Biosample type
122
tissue
5
primary cell
Organ
288
pancreas
225
kidney
213
epithelium
166
liver
165
heart
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
127
AMP
Genome assembly (visualization)
229
GRCh38
hg19
Lab
127
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
BIOSAMPLE
ASSAY
127 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
layer of hippocampus
22
caudate nucleus
14
1
1
substantia nigra
14
1
cingulate gyrus
12
middle frontal area 46
12
+ See 28 more…
primary cell
endothelial cell of umbilical vein
5
See all biosamples
Download