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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
7
DNase-seq
5
Hi-C
3
single cell RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
26
DNA binding
8
DNA accessibility
5
3D chromatin structure
3
Transcription
1
DNA methylation
Target of assay
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
8
control
3
RNA binding protein
3
transcription factor
Date released
21
October, 2019
9
November, 2017
7
July, 2019
5
June, 2019
1
March, 2020
Available data
37
bam
35
bigWig
24
bed narrowPeak
24
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
10
bed bed3+
9
fastq
3
hdf5
3
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
43
Homo sapiens
Biosample type
tissue
43
primary cell
Organ
509
epithelium
441
pancreas
430
liver
137
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
43
AMP
Genome assembly (visualization)
38
hg19
26
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
1
audit script error
biosample_type!
tissue
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
DNase-seq
Hi-C
single cell RNA-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
17
2
2
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
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