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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
12
total RNA-seq
5
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
22
DNA binding
12
Transcription
5
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
1
control
Date released
13
November, 2017
12
February, 2020
7
October, 2017
5
July, 2019
4
October, 2019
3
March, 2020
1
February, 2023
Available data
bam
237
bigWig
216
bed narrowPeak
140
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
37
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
45
Homo sapiens
Biosample type
39
tissue
6
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
142
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
45
AMP
Genome assembly (visualization)
11
hg19
2
GRCh38
Lab
45
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
BIOSAMPLE
ASSAY
45 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
tissue
brain
7
1
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
1
Ammon's horn
1
1
+ See 15 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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