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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
34
DNase-seq
17
total RNA-seq
5
Hi-C
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
117
DNA binding
40
DNA accessibility
24
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
103
histone
103
histone modification
69
narrow histone mark
34
broad histone mark
14
control
3
RNA binding protein
3
transcription factor
Date released
69
October, 2019
30
June, 2019
28
May, 2019
25
November, 2017
18
July, 2019
12
February, 2020
3
March, 2020
2
November, 2018
2
October, 2017
1
February, 2023
Available data
263
bam
237
bigWig
216
bed narrowPeak
140
bigBed narrowPeak
tagAlign
51
bed broadPeak
42
bigBed broadPeak
37
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
190
Homo sapiens
Biosample type
147
tissue
43
primary cell
Organ
927
pancreas
705
liver
662
connective tissue
517
epithelium
483
adipose tissue
354
kidney
347
heart
230
vasculature
224
blood vessel
168
brain
159
bone element
135
artery
122
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
190
AMP
Genome assembly (visualization)
147
GRCh38
138
hg19
Lab
190
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
190 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
small RNA-seq
single cell RNA-seq
FAIRE-seq
RRBS
pCHi-C
tissue
brain
6
14
1
1
1
temporal lobe
15
1
1
angular gyrus
13
layer of hippocampus
8
cerebellum (Hemisphere)
2
1
1
1
1
+ See 57 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 3 more…
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