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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
DNase-seq
33
ChIP-seq
17
total RNA-seq
5
Hi-C
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
40
DNA accessibility
33
DNA binding
24
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
histone
202
histone modification
123
narrow histone mark
79
broad histone mark
33
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
July, 2019
18
November, 2017
15
October, 2019
12
February, 2020
4
October, 2017
3
March, 2020
3
May, 2019
2
November, 2018
1
February, 2023
Available data
82
bam
59
bigWig
39
bed narrowPeak
39
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
26
tsv
19
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
106
Homo sapiens
Biosample type
81
tissue
25
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
106
AMP
Genome assembly (visualization)
52
hg19
51
GRCh38
Lab
106
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
106 results
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DNase-seq
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
small RNA-seq
single cell RNA-seq
FAIRE-seq
RRBS
pCHi-C
tissue
brain
14
3
1
1
1
cerebellum (Hemisphere)
1
2
1
1
1
frontal cortex
2
2
1
1
caudate nucleus
1
2
1
temporal lobe
2
1
1
+ See 29 more…
primary cell
endothelial cell of umbilical vein
2
2
2
1
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
+ See 3 more…
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