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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
215
DNA binding
37
DNA accessibility
24
Transcription
3D chromatin structure
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
RNA binding protein
3
transcription factor
Date released
88
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
13
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
240
bam
216
bigWig
200
bed narrowPeak
124
bigBed narrowPeak
118
tagAlign
44
bed broadPeak
35
bigBed broadPeak
32
bed bed3+
26
tsv
18
fastq
1
bed bed3
1
tagAlign bed3+
Organism
278
Homo sapiens
Biosample type
264
tissue
14
primary cell
Organ
875
pancreas
722
liver
666
connective tissue
480
adipose tissue
455
epithelium
369
heart
346
kidney
278
brain
223
vasculature
219
blood vessel
159
bone element
140
artery
117
limb
84
musculature of body
59
blood
59
bodily fluid
59
eye
43
nerve
37
embryo
23
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
278
AMP
Genome assembly (visualization)
214
GRCh38
156
hg19
Lab
278
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
target.investigated_as!
RNA binding protein
assay_slims!
DNA methylation
3D chromatin structure
BIOSAMPLE
ASSAY
278 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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