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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
12
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
13
DNA binding
12
Transcription
3
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
21
histone
21
histone modification
12
narrow histone mark
broad histone mark
1
control
Date released
12
February, 2020
9
November, 2017
5
July, 2019
3
October, 2019
2
March, 2020
2
October, 2017
1
February, 2023
Available data
bam
162
bigWig
142
bed narrowPeak
73
tagAlign
69
bigBed narrowPeak
43
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
15
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
34
Homo sapiens
Biosample type
30
tissue
4
primary cell
Organ
249
pancreas
210
kidney
207
epithelium
142
heart
97
liver
93
bone element
63
connective tissue
54
eye
51
vasculature
50
blood vessel
39
artery
34
brain
29
adipose tissue
27
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
34
AMP
Genome assembly (visualization)
9
hg19
2
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
broad histone mark
files.file_type!
bam
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
tissue
brain
2
1
1
cingulate gyrus
4
substantia nigra
2
1
Ammon's horn
1
1
caudate nucleus
1
1
+ See 15 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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