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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
148
DNA binding
24
Transcription
5
DNA accessibility
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
83
October, 2019
49
November, 2017
15
July, 2019
13
May, 2019
12
February, 2020
6
October, 2017
2
March, 2020
1
February, 2023
Available data
182
bam
162
bigWig
142
bed narrowPeak
73
tagAlign
69
bigBed narrowPeak
43
bed broadPeak
38
bigBed broadPeak
bed bed3+
26
tsv
15
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
181
Homo sapiens
Biosample type
168
tissue
13
primary cell
Organ
845
pancreas
737
liver
613
connective tissue
465
adipose tissue
460
epithelium
286
heart
261
kidney
181
brain
178
vasculature
174
blood vessel
159
bone element
123
artery
69
blood
69
bodily fluid
57
eye
52
limb
42
musculature of body
31
embryo
25
nerve
20
lung
20
spleen
16
skeleton
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
181
AMP
Genome assembly (visualization)
124
GRCh38
114
hg19
Lab
181
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
target.investigated_as!
broad histone mark
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
181 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
11
brain
7
1
1
1
substantia nigra
8
1
temporal lobe
7
1
1
angular gyrus
8
+ See 72 more…
primary cell
choroid plexus epithelial cell
3
1
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
cerebellar granule cell
2
Purkinje cell
1
See all biosamples
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