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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
12
total RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
ATAC-seq
Assay category
13
DNA binding
12
Transcription
3
3D chromatin structure
2
DNA methylation
1
DNA accessibility
Target of assay
21
histone
21
histone modification
12
narrow histone mark
broad histone mark
1
control
Date released
12
February, 2020
9
November, 2017
5
July, 2019
3
October, 2019
2
March, 2020
2
October, 2017
February, 2023
Available data
bam
162
bigWig
142
bed narrowPeak
73
tagAlign
69
bigBed narrowPeak
43
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
15
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
33
Homo sapiens
Biosample type
29
tissue
4
primary cell
Organ
210
kidney
193
pancreas
155
epithelium
126
heart
97
liver
85
bone element
49
connective tissue
33
brain
28
adipose tissue
27
musculature of body
23
eye
20
lung
16
vasculature
15
blood vessel
9
blood
9
bodily fluid
8
limb
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
8
hg19
2
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
broad histone mark
files.file_type!
bam
month_released!
February, 2023
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
ATAC-seq
tissue
cingulate gyrus
4
brain
2
1
substantia nigra
2
1
Ammon's horn
1
1
caudate nucleus
1
1
+ See 15 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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