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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
12
total RNA-seq
10
DNase-seq
3
ATAC-seq
2
pCHi-C
Assay category
70
DNA binding
13
DNA accessibility
12
Transcription
Target of assay
70
histone
70
histone modification
45
broad histone mark
control
25
narrow histone mark
Date released
64
November, 2017
12
February, 2020
10
June, 2019
7
October, 2017
2
March, 2020
1
July, 2019
1
October, 2019
Available data
64
bam
63
bigWig
62
bed narrowPeak
62
bigBed narrowPeak
56
tagAlign
14
tsv
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
2
fastq
Organism
97
Homo sapiens
Biosample type
97
tissue
Organ
237
pancreas
213
kidney
185
epithelium
145
heart
97
brain
89
bone element
72
liver
61
connective tissue
51
blood vessel
51
vasculature
41
adipose tissue
39
artery
26
eye
20
lung
17
musculature of body
9
limb
8
blood
8
bodily fluid
5
gonad
5
ovary
4
skeleton
3
spleen
3
vein
2
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
97
AMP
Genome assembly (visualization)
214
GRCh38
hg19
Lab
97
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
target.investigated_as!
control
assembly!
hg19
BIOSAMPLE
ASSAY
97 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
layer of hippocampus
19
caudate nucleus
12
1
1
substantia nigra
12
1
cingulate gyrus
10
middle frontal area 46
10
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