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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
22
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
120
DNA binding
24
DNA accessibility
9
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
117
histone
117
histone modification
92
narrow histone mark
25
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
78
October, 2019
25
May, 2019
20
June, 2019
14
July, 2019
12
November, 2017
6
October, 2017
2
November, 2018
1
February, 2023
Available data
153
bigWig
149
bam
141
bed narrowPeak
65
bigBed narrowPeak
43
tagAlign
37
bed broadPeak
28
bigBed broadPeak
25
bed bed3+
14
fastq
9
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
158
Homo sapiens
Biosample type
143
tissue
15
primary cell
Organ
656
pancreas
611
liver
588
connective tissue
426
adipose tissue
309
epithelium
188
heart
163
vasculature
158
blood vessel
158
brain
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
28
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
158
AMP
Genome assembly (visualization)
214
GRCh38
158
hg19
Lab
158
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
target.investigated_as!
control
BIOSAMPLE
ASSAY
158 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
1
1
temporal lobe
13
1
1
angular gyrus
14
frontal cortex
2
1
1
1
superior frontal gyrus
4
+ See 66 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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