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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
12
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
21
DNA binding
12
Transcription
3
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
control
Date released
13
November, 2017
12
February, 2020
6
October, 2017
5
July, 2019
3
October, 2019
2
March, 2020
1
February, 2023
Available data
216
bigWig
bam
203
bed narrowPeak
127
bigBed narrowPeak
99
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
23
tsv
16
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
42
Homo sapiens
Biosample type
38
tissue
4
primary cell
Organ
246
pancreas
210
kidney
204
epithelium
142
heart
103
liver
93
bone element
84
connective tissue
54
eye
51
vasculature
50
blood vessel
44
adipose tissue
42
brain
39
artery
36
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
42
AMP
Genome assembly (visualization)
9
hg19
2
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
target.investigated_as!
control
files.file_type!
bam
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
tissue
brain
6
1
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
1
Ammon's horn
1
1
+ See 15 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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