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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
190
DNA binding
37
DNA accessibility
9
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
79
October, 2019
76
November, 2017
30
June, 2019
25
May, 2019
15
July, 2019
13
October, 2017
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
216
bigWig
213
bam
203
bed narrowPeak
127
bigBed narrowPeak
99
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
16
fastq
11
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
243
Homo sapiens
Biosample type
228
tissue
15
primary cell
Organ
892
pancreas
682
liver
647
connective tissue
494
epithelium
465
adipose tissue
342
kidney
330
heart
243
brain
211
vasculature
206
blood vessel
159
bone element
130
artery
102
limb
88
musculature of body
63
blood
63
bodily fluid
59
eye
31
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
243
AMP
Genome assembly (visualization)
214
GRCh38
158
hg19
Lab
243
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
target.investigated_as!
control
month_released!
February, 2020
BIOSAMPLE
ASSAY
243 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
17
14
1
1
1
layer of hippocampus
20
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
13
1
+ See 75 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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