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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
239
ChIP-seq
68
DNase-seq
24
total RNA-seq
12
ATAC-seq
7
Hi-C
4
small RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
1
WGBS
Assay category
239
DNA binding
81
DNA accessibility
28
Transcription
7
3D chromatin structure
3
DNA methylation
Target of assay
236
histone
236
histone modification
132
narrow histone mark
104
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
132
October, 2019
76
November, 2017
62
June, 2019
31
May, 2019
20
July, 2019
15
February, 2020
13
October, 2017
6
February, 2021
2
March, 2020
2
November, 2018
1
February, 2023
Available data
310
bam
307
bigWig
295
bed narrowPeak
211
bigBed narrowPeak
99
tagAlign
83
bed broadPeak
74
bigBed broadPeak
71
bed bed3+
30
tsv
16
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
360
Homo sapiens
Biosample type
345
tissue
15
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
342
kidney
333
heart
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
360
AMP
Genome assembly (visualization)
310
GRCh38
254
hg19
Lab
360
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
target.investigated_as!
control
BIOSAMPLE
ASSAY
360 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
RRBS
pCHi-C
FAIRE-seq
WGBS
tissue
brain
17
14
1
1
1
tibial nerve
24
2
5
1
tibial artery
18
2
1
1
layer of hippocampus
20
muscle of leg
6
13
1
+ See 90 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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