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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
28
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
36
DNA accessibility
28
DNA binding
24
Transcription
3
3D chromatin structure
Target of assay
histone
175
histone modification
115
narrow histone mark
60
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
November, 2017
16
July, 2019
12
February, 2020
9
October, 2019
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
74
bam
55
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
26
tsv
17
tagAlign
8
fastq
3
hdf5
1
bed bed3
Organism
93
Homo sapiens
Biosample type
76
tissue
17
primary cell
Organ
788
pancreas
687
liver
604
connective tissue
458
adipose tissue
425
epithelium
320
kidney
294
heart
164
vasculature
160
blood vessel
159
bone element
121
artery
93
brain
73
limb
68
blood
68
bodily fluid
58
musculature of body
57
eye
25
embryo
20
lung
19
nerve
18
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
93
AMP
Genome assembly (visualization)
48
GRCh38
45
hg19
Lab
93
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
assay_title!
RRBS
month_released!
October, 2017
BIOSAMPLE
ASSAY
93 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
brain
14
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
2
1
1
caudate nucleus
1
2
1
temporal lobe
2
1
1
+ See 29 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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