Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
DNase-seq
6
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
24
DNA accessibility
9
Transcription
6
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
117
histone modification
92
narrow histone mark
25
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
20
June, 2019
14
July, 2019
6
November, 2017
2
November, 2018
1
February, 2023
1
October, 2019
Available data
41
bigWig
38
bam
26
bed narrowPeak
26
bigBed narrowPeak
25
bed bed3+
25
bed broadPeak
25
bigBed broadPeak
9
tsv
8
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
44
Homo sapiens
Biosample type
29
tissue
15
primary cell
Organ
550
connective tissue
543
liver
442
pancreas
424
adipose tissue
151
epithelium
126
heart
99
kidney
97
vasculature
92
blood vessel
73
artery
70
bone element
54
blood
54
bodily fluid
48
limb
46
musculature of body
44
brain
33
eye
18
embryo
18
ureter
12
skeleton
8
spleen
7
nerve
5
vein
2
pericardium
Project
44
AMP
Genome assembly (visualization)
46
GRCh38
44
hg19
Lab
44
AMP-T2D consortium
target.investigated_as!
histone
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
44 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
14
1
1
1
frontal cortex
2
1
1
1
cerebellum (Hemisphere)
1
1
diencephalon
1
1
temporal lobe
1
1
+ See 1 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
Download