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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
5
DNase-seq
3
Hi-C
single cell RNA-seq
1
RRBS
Assay category
6
DNA binding
5
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
3
RNA binding protein
3
control
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
6
November, 2017
5
June, 2019
4
July, 2019
Available data
14
bigWig
11
bam
8
bed bed3+
8
bed broadPeak
8
bed narrowPeak
8
bigBed broadPeak
8
bigBed narrowPeak
6
fastq
3
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
Organism
15
Homo sapiens
Biosample type
81
tissue
15
primary cell
Organ
270
epithelium
214
pancreas
27
connective tissue
26
kidney
20
vasculature
15
blood vessel
15
brain
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
15
AMP
Genome assembly (visualization)
15
hg19
8
GRCh38
Lab
15
AMP-T2D consortium
target.investigated_as!
histone
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
15 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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