Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
31
DNA binding
21
Transcription
5
DNA accessibility
2
DNA methylation
Target of assay
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
18
November, 2017
12
February, 2020
12
July, 2019
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
74
bam
53
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
23
tsv
19
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
61
Homo sapiens
Biosample type
54
tissue
7
primary cell
Organ
704
pancreas
678
liver
575
connective tissue
453
adipose tissue
343
epithelium
182
kidney
173
heart
159
bone element
146
vasculature
143
blood vessel
115
artery
68
blood
68
bodily fluid
61
brain
54
eye
37
limb
28
musculature of body
24
embryo
18
spleen
17
nerve
16
skeleton
11
lung
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
19
hg19
14
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
assay_title!
single cell RNA-seq
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
61 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
3
1
1
1
cerebellum (Hemisphere)
2
1
1
1
frontal cortex
2
1
1
temporal lobe
2
1
1
caudate nucleus
2
1
+ See 22 more…
primary cell
choroid plexus epithelial cell
2
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
See all biosamples
Download