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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
28
DNA binding
21
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
28
control
Date released
15
July, 2019
15
November, 2017
12
February, 2020
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
74
bam
53
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
bigBed broadPeak
23
tsv
19
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
61
Homo sapiens
Biosample type
54
tissue
7
primary cell
Organ
714
pancreas
639
liver
593
connective tissue
457
adipose tissue
343
epithelium
182
kidney
173
heart
159
bone element
146
vasculature
144
blood vessel
115
artery
68
blood
68
bodily fluid
61
brain
54
eye
37
limb
29
musculature of body
25
embryo
18
spleen
17
nerve
16
skeleton
11
lung
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
19
hg19
11
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
assay_title!
single cell RNA-seq
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
3
1
1
1
cerebellum (Hemisphere)
2
1
1
1
frontal cortex
2
1
1
temporal lobe
2
1
1
caudate nucleus
2
1
+ See 22 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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