Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
DNase-seq
27
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
35
DNA accessibility
27
DNA binding
21
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
26
control
1
RNA binding protein
1
transcription factor
Date released
28
June, 2019
14
November, 2017
13
July, 2019
12
February, 2020
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
68
bam
46
bigWig
32
bed bed3+
32
bed narrowPeak
32
bigBed narrowPeak
31
bed broadPeak
31
bigBed broadPeak
23
tsv
19
tagAlign
7
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
88
Homo sapiens
Biosample type
81
tissue
7
primary cell
Organ
721
pancreas
688
liver
602
connective tissue
459
adipose tissue
epithelium
260
kidney
203
heart
159
bone element
159
vasculature
154
blood vessel
119
artery
96
brain
73
limb
68
blood
68
bodily fluid
62
musculature of body
58
eye
25
embryo
19
nerve
19
spleen
18
ureter
16
skeleton
11
lung
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
42
GRCh38
36
hg19
Lab
88
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
assay_title!
single cell RNA-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
88 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
14
3
1
1
1
cerebellum (Hemisphere)
1
2
1
1
1
frontal cortex
2
2
1
1
caudate nucleus
1
2
1
temporal lobe
2
1
1
+ See 29 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
Download