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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
pCHi-C
1
FAIRE-seq
Assay category
37
DNA accessibility
31
DNA binding
7
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
November, 2017
14
July, 2019
8
October, 2019
4
October, 2017
3
May, 2019
2
November, 2018
1
February, 2023
Available data
72
bam
51
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
19
tagAlign
11
fastq
7
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
80
Homo sapiens
Biosample type
62
tissue
18
primary cell
Organ
497
liver
391
pancreas
300
epithelium
262
kidney
221
heart
127
connective tissue
103
vasculature
98
blood vessel
96
bone element
80
brain
68
blood
68
bodily fluid
66
limb
65
artery
59
adipose tissue
56
musculature of body
35
eye
19
lung
18
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
7
vein
1
pericardium
1
pituitary gland
1
skin of body
Project
80
AMP
Genome assembly (visualization)
44
GRCh38
42
hg19
Lab
80
AMP-T2D consortium
target.investigated_as!
histone
assay_title!
total RNA-seq
pCHi-C
BIOSAMPLE
ASSAY
80 results
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DNase-seq
ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
14
3
1
1
cerebellum (Hemisphere)
1
2
1
1
frontal cortex
2
1
1
caudate nucleus
1
2
layer of hippocampus
3
+ See 22 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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