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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
DNase-seq
23
ChIP-seq
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
34
DNA accessibility
23
DNA binding
7
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
177
histone modification
113
narrow histone mark
64
broad histone mark
26
control
Date released
30
June, 2019
14
July, 2019
12
November, 2017
8
October, 2019
3
May, 2019
2
March, 2020
1
February, 2023
1
October, 2017
Available data
72
bam
51
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
19
tagAlign
fastq
9
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
71
Homo sapiens
Biosample type
59
tissue
12
primary cell
Organ
264
kidney
224
heart
205
pancreas
175
epithelium
100
vasculature
97
blood vessel
97
bone element
84
liver
71
brain
66
limb
65
artery
57
connective tissue
55
musculature of body
39
eye
20
lung
18
adipose tissue
18
ureter
14
nerve
12
skeleton
9
blood
9
bodily fluid
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
71
AMP
Genome assembly (visualization)
38
GRCh38
34
hg19
Lab
71
AMP-T2D consortium
target.investigated_as!
histone
assay_title!
total RNA-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
71 results
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DNase-seq
ChIP-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
12
1
1
1
cerebellum (Hemisphere)
1
2
1
frontal cortex
2
1
1
caudate nucleus
1
2
layer of hippocampus
3
+ See 23 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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