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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
total RNA-seq
3
ATAC-seq
2
pCHi-C
Assay category
35
DNA accessibility
31
DNA binding
Target of assay
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
November, 2017
July, 2019
8
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
63
bam
39
bigWig
35
bed broadPeak
35
bed narrowPeak
35
bigBed broadPeak
35
bigBed narrowPeak
32
bed bed3+
19
tagAlign
11
fastq
2
tsv
1
bed bed3
Organism
68
Homo sapiens
Biosample type
57
tissue
11
primary cell
Organ
494
liver
388
pancreas
292
epithelium
258
kidney
209
heart
127
connective tissue
97
bone element
97
vasculature
93
blood vessel
68
blood
68
bodily fluid
68
brain
64
artery
61
limb
58
adipose tissue
49
musculature of body
38
eye
20
lung
19
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
68
AMP
Genome assembly (visualization)
36
GRCh38
29
hg19
Lab
68
AMP-T2D consortium
target.investigated_as!
histone
assay_title!
total RNA-seq
month_released!
July, 2019
BIOSAMPLE
ASSAY
68 results
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DNase-seq
ChIP-seq
ATAC-seq
pCHi-C
tissue
brain
14
3
1
cerebellum (Hemisphere)
1
2
1
caudate nucleus
1
2
layer of hippocampus
3
Ammon's horn
1
1
+ See 21 more…
primary cell
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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