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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
total RNA-seq
33
ChIP-seq
32
ATAC-seq
6
pCHi-C
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
1
FAIRE-seq
Assay category
69
DNA accessibility
33
DNA binding
7
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
histone
190
histone modification
120
narrow histone mark
70
broad histone mark
32
control
4
RNA binding protein
4
transcription factor
Date released
36
June, 2019
28
February, 2023
18
November, 2017
15
July, 2019
13
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
Available data
78
bam
68
bed narrowPeak
56
bigWig
41
bigBed narrowPeak
39
bed bed3+
39
bed broadPeak
39
bigBed broadPeak
19
tagAlign
11
fastq
9
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
Organism
121
Homo sapiens
Biosample type
99
tissue
22
primary cell
Organ
500
liver
392
pancreas
300
epithelium
264
kidney
224
heart
132
connective tissue
104
vasculature
99
blood vessel
97
bone element
82
brain
68
blood
68
bodily fluid
66
limb
65
artery
61
adipose tissue
57
musculature of body
39
eye
20
lung
19
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
121
AMP
Genome assembly (visualization)
75
hg19
49
GRCh38
Lab
121
AMP-T2D consortium
target.investigated_as!
histone
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
121 results
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DNase-seq
ChIP-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
tissue
brain
14
3
1
1
retina
3
15
pigmented layer of retina
12
islet of Langerhans
2
4
cerebellum (Hemisphere)
1
2
1
1
+ See 25 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
retinal pigment epithelial cell
1
2
1
brain pericyte
1
1
+ See 3 more…
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