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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
DNase-seq
23
ChIP-seq
17
total RNA-seq
8
snATAC-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
43
DNA accessibility
24
Transcription
23
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
177
histone modification
113
narrow histone mark
64
broad histone mark
26
control
Date released
30
June, 2019
18
July, 2019
12
February, 2020
12
November, 2017
9
October, 2019
8
January, 2021
3
May, 2019
2
March, 2020
1
February, 2023
1
January, 2018
1
October, 2017
Available data
136
bam
110
bigWig
89
bed narrowPeak
89
bigBed narrowPeak
fastq
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
26
tsv
19
tagAlign
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
97
Homo sapiens
Biosample type
76
tissue
20
primary cell
1
cell line
Organ
531
connective tissue
424
pancreas
416
adipose tissue
324
kidney
296
heart
268
liver
225
epithelium
161
vasculature
159
bone element
158
blood vessel
121
artery
88
brain
73
limb
61
musculature of body
58
eye
20
lung
19
nerve
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
89
AMP
8
T1D
Genome assembly (visualization)
43
GRCh38
40
hg19
Lab
89
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
files.file_type!
fastq
BIOSAMPLE
ASSAY
97 results
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DNase-seq
ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
12
1
1
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
2
1
1
caudate nucleus
1
2
1
temporal lobe
2
1
1
+ See 29 more…
primary cell
peripheral blood mononuclear cell
8
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 3 more…
cell line
GM12878
1
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