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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
25
ChIP-seq
17
total RNA-seq
5
Hi-C
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
37
DNA accessibility
25
DNA binding
24
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
histone
192
histone modification
119
narrow histone mark
73
broad histone mark
28
control
Date released
30
June, 2019
18
July, 2019
15
October, 2019
12
February, 2020
12
November, 2017
3
March, 2020
3
May, 2019
1
February, 2023
1
October, 2017
Available data
82
bam
59
bigWig
39
bed narrowPeak
39
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
26
tsv
19
tagAlign
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
95
Homo sapiens
Biosample type
76
tissue
19
primary cell
Organ
531
connective tissue
424
pancreas
416
adipose tissue
324
kidney
296
heart
268
liver
225
epithelium
161
vasculature
159
bone element
158
blood vessel
121
artery
88
brain
73
limb
61
musculature of body
58
eye
20
lung
19
nerve
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
95
AMP
Genome assembly (visualization)
45
GRCh38
44
hg19
Lab
95
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
target.investigated_as!
histone
files.file_type!
fastq
BIOSAMPLE
ASSAY
95 results
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DNase-seq
ChIP-seq
total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
single cell RNA-seq
FAIRE-seq
RRBS
pCHi-C
tissue
brain
12
1
1
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
2
1
1
caudate nucleus
1
2
1
temporal lobe
2
1
1
+ See 29 more…
primary cell
endothelial cell of umbilical vein
2
2
2
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 3 more…
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