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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
Assay category
DNA accessibility
29
DNA binding
24
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
histone
186
histone modification
116
narrow histone mark
70
broad histone mark
30
control
2
RNA binding protein
2
transcription factor
Date released
16
November, 2017
15
July, 2019
12
February, 2020
8
October, 2019
3
May, 2019
3
October, 2017
2
March, 2020
Available data
40
bam
26
tsv
19
tagAlign
18
bigWig
6
fastq
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bed narrowPeak
2
bigBed bedMethyl
2
bigBed broadPeak
2
bigBed narrowPeak
2
hdf5
Organism
59
Homo sapiens
Biosample type
49
tissue
10
primary cell
Organ
660
liver
622
pancreas
572
connective tissue
451
adipose tissue
308
epithelium
219
heart
161
kidney
147
bone element
107
vasculature
blood vessel
72
artery
62
brain
59
blood
59
bodily fluid
29
limb
28
musculature of body
26
eye
25
embryo
17
spleen
16
nerve
10
lung
4
skeleton
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
20
hg19
14
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
organ_slims!
blood vessel
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
Hi-C
RRBS
pCHi-C
tissue
brain
3
1
1
cerebellum (Hemisphere)
2
1
1
temporal lobe
2
1
1
caudate nucleus
2
1
frontal cortex
2
1
+ See 20 more…
primary cell
astrocyte of the cerebellum
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
brain pericyte
1
See all biosamples
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