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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
DNase-seq
29
ChIP-seq
4
ATAC-seq
2
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
36
DNA accessibility
29
DNA binding
2
3D chromatin structure
2
DNA methylation
Target of assay
histone
186
histone modification
116
narrow histone mark
70
broad histone mark
27
control
2
RNA binding protein
2
transcription factor
Date released
29
June, 2019
16
November, 2017
8
October, 2019
6
July, 2019
4
October, 2017
3
May, 2019
2
November, 2018
1
February, 2023
Available data
74
bam
52
bigWig
34
bed narrowPeak
34
bigBed narrowPeak
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
tsv
19
tagAlign
9
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
Organism
69
Homo sapiens
Biosample type
58
tissue
11
primary cell
Organ
515
liver
378
pancreas
300
kidney
275
epithelium
128
connective tissue
128
heart
101
bone element
97
vasculature
blood vessel
73
brain
68
blood
68
bodily fluid
66
limb
63
artery
58
adipose tissue
54
musculature of body
53
eye
19
lung
18
spleen
18
ureter
16
skeleton
14
nerve
11
embryo
7
vein
1
bone marrow
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
69
AMP
Genome assembly (visualization)
35
GRCh38
31
hg19
Lab
69
AMP-T2D consortium
target.investigated_as!
histone
organ_slims!
blood vessel
files.file_type!
tsv
BIOSAMPLE
ASSAY
69 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
14
3
1
1
cerebellum (Hemisphere)
1
2
1
caudate nucleus
1
2
frontal cortex
2
1
layer of hippocampus
3
+ See 21 more…
primary cell
astrocyte of the cerebellum
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
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