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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
DNase-seq
29
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
2
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
36
DNA accessibility
29
DNA binding
24
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
histone
190
histone modification
120
narrow histone mark
70
broad histone mark
30
control
2
RNA binding protein
2
transcription factor
Date released
29
June, 2019
17
July, 2019
16
November, 2017
12
February, 2020
9
October, 2019
4
October, 2017
3
March, 2020
3
May, 2019
2
November, 2018
1
February, 2023
Available data
74
bam
52
bigWig
34
bed narrowPeak
34
bigBed narrowPeak
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
27
tsv
19
tagAlign
9
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
Organism
96
Homo sapiens
Biosample type
82
tissue
14
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
96
AMP
Genome assembly (visualization)
47
GRCh38
43
hg19
Lab
96
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
96 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
single cell RNA-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
14
3
1
1
1
cerebellum (Hemisphere)
1
2
1
1
1
frontal cortex
2
2
1
1
caudate nucleus
1
2
1
temporal lobe
2
1
1
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primary cell
astrocyte of the cerebellum
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
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