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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
31
DNA binding
Target of assay
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
18
November, 2017
7
October, 2019
3
May, 2019
3
October, 2017
Available data
30
bam
19
tagAlign
8
fastq
6
bigWig
3
bed broadPeak
3
bed narrowPeak
3
bigBed broadPeak
3
bigBed narrowPeak
Organism
31
Homo sapiens
Biosample type
25
tissue
6
primary cell
Organ
450
liver
75
connective tissue
67
pancreas
59
blood
59
bodily fluid
41
adipose tissue
37
heart
36
epithelium
31
brain
31
vasculature
29
blood vessel
22
kidney
17
limb
14
artery
14
spleen
11
nerve
10
embryo
6
musculature of body
2
eye
2
vein
Project
31
AMP
Genome assembly (visualization)
6
hg19
3
GRCh38
Lab
31
AMP-T2D consortium
target.investigated_as!
histone
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
tissue
brain
3
layer of hippocampus
3
caudate nucleus
2
cerebellum (Hemisphere)
2
cingulate gyrus
2
+ See 10 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
See all biosamples
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