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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
DNase-seq
48
ChIP-seq
24
total RNA-seq
12
ATAC-seq
7
Hi-C
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
1
WGBS
Assay category
81
DNA accessibility
48
DNA binding
31
Transcription
7
3D chromatin structure
3
DNA methylation
Target of assay
histone
236
histone modification
132
narrow histone mark
104
broad histone mark
48
control
3
RNA binding protein
3
transcription factor
Date released
62
June, 2019
35
October, 2019
23
July, 2019
18
November, 2017
15
February, 2020
6
February, 2021
4
May, 2019
4
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
143
bam
99
bigWig
80
bed narrowPeak
72
bigBed narrowPeak
71
bed bed3+
71
bed broadPeak
71
bigBed broadPeak
33
tsv
19
tagAlign
11
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
Organism
172
Homo sapiens
Biosample type
154
tissue
18
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
172
AMP
Genome assembly (visualization)
98
GRCh38
95
hg19
Lab
172
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
172 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
WGBS
tissue
brain
14
3
1
1
1
tibial nerve
2
11
5
1
muscle of arm
17
muscle of leg
13
1
1
tibial artery
2
5
1
1
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primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
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