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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
DNase-seq
50
ChIP-seq
43
total RNA-seq
40
ATAC-seq
7
Hi-C
6
pCHi-C
4
small RNA-seq
3
RRBS
3
single cell RNA-seq
1
FAIRE-seq
1
WGBS
Assay category
113
DNA accessibility
50
DNA binding
50
Transcription
7
3D chromatin structure
4
DNA methylation
Target of assay
histone
239
histone modification
135
narrow histone mark
104
broad histone mark
49
control
4
RNA binding protein
4
transcription factor
Date released
68
June, 2019
54
October, 2019
32
February, 2023
24
July, 2019
18
November, 2017
16
February, 2020
6
February, 2021
4
May, 2019
4
October, 2017
2
March, 2020
2
November, 2018
Available data
149
bam
112
bed narrowPeak
104
bigWig
77
bigBed narrowPeak
75
bed bed3+
75
bed broadPeak
75
bigBed broadPeak
38
tsv
19
tagAlign
11
fastq
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
Organism
230
Homo sapiens
Biosample type
208
tissue
22
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
230
AMP
Genome assembly (visualization)
128
hg19
103
GRCh38
Lab
230
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
230 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
FAIRE-seq
WGBS
tissue
retina
3
3
15
brain
14
3
1
1
1
islet of Langerhans
14
2
4
tibial nerve
2
11
5
1
muscle of arm
17
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primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
retinal pigment epithelial cell
1
2
1
brain pericyte
1
1
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